Index

A

add_contact() (Agent method) add_content() (Stats static method) add_event() (Location method) add_event_result() (Agent method) add_machine() (TestPolicy method) add_partial_to_ready_queue() (TestPolicy method) add_target_name() (VD method)

add_vaccines() (VaccinationPolicy method) Agent (class in episimmer.agent) AgentLockdown (class in episimmer.policy) AgentLockdownPolicy (class in episimmer.policy) AgentPolicy (class in episimmer.policy) AgentVD (class in episimmer.vulnerability_detection) AgentVulnerability (class in episimmer.vulnerability_detection) animate_graph() (in module episimmer.utils)

B

BanditAlgos (class in episimmer.vulnerability_detection) BaseModel (class in episimmer.model)

BaseReadFile (class in episimmer.read_file) buildgraph() (in module episimmer.utils)

C

choose_one_state() (ScheduledModel method) ChunkAgentVulnerability (class in episimmer.vulnerability_detection) contact_testing() (TestPolicy method) convert_state() (Simulate method)

create_info_dict() (ReadAgents method) (ReadLocations method) CTPolicy (class in episimmer.policy) current_time_step (Time attribute) current_world (Time attribute)

D

deep_copy_average() (in module episimmer.utils)

deep_copy_stddev() (in module episimmer.utils) draw_graph() (in module episimmer.utils)

E

EarlyVulnerableAgent (class in episimmer.vulnerability_detection) enact_policy() (AgentLockdown method) (EventLockdown method) (FullLockdown method) (Policy method) (TestingBasedLockdown method) (TestPolicy method) (VaccinationPolicy method) end_simulation() (Simulate method) end_time_step() (Simulate method) (TestPolicy method) episimmer.agent module

episimmer.location module episimmer.simulate module episimmer.utils.time module episimmer.world module EventLockdown (class in episimmer.policy) EventLockdownPolicy (class in episimmer.policy) EventPolicy (class in episimmer.policy) EventVD (class in episimmer.vulnerability_detection) expand_levels() (in module episimmer.utils) expand_levels_recursion() (in module episimmer.utils)

F

find_next_state() (BaseModel method) (ScheduledModel method) (StochasticModel method) find_scheduled_time() (ScheduledModel method) full_contact_testing() (TestPolicy method) full_multi_dose_vaccination() (VaccinationPolicy method) full_p_function() (StochasticModel method)

full_p_infection() (ScheduledModel method) (StochasticModel method) full_p_standard() (StochasticModel method) full_random_testing() (TestPolicy method) full_random_vaccination() (VaccinationPolicy method) full_scheduled() (ScheduledModel method) FullLockdown (class in episimmer.policy)

G

generate_bounds() (ChunkAgentVulnerability method) get_accumulated_test_result() (TestPolicy static method) get_agent_policy_history() (AgentPolicy method) get_agent_policy_state() (AgentPolicy method) get_agent_test_result() (TestPolicy static method) get_algorithm() (VD method) get_class() (VD method) get_contact_list() (CTPolicy static method) get_current_time_step() (Time static method) get_current_world() (Time static method) get_dict() (Stats static method) get_event() (ReadEvents method) get_events() (SimpleEventVulnerability method) get_file_names_list() (ReadConfiguration method) get_file_paths() (ReadConfiguration method) get_final_infection_prob() (BaseModel method) get_init_score() (BanditAlgos method) get_interaction() (ReadInteractions method) get_interaction_graph_from_object() (in module episimmer.utils) get_interactions() (ReadProbabilisticInteractions method) get_machine_name() (Machine method) (TestResult method)

get_max_schedule_time() (CTPolicy static method) get_max_score_agents() (AgentVD method) get_max_score_events() (EventVD method) get_maximum_agent_vulnerability() (ChunkAgentVulnerability method) get_min_score_agents() (AgentVD method) get_min_score_events() (EventVD method) get_minimum_agent_vulnerability() (ChunkAgentVulnerability method) get_model() (in module episimmer.utils) get_num_agents() (TestTube method) get_policy() (in module episimmer.utils) get_policy_history() (Agent method) get_policy_index_list() (CTPolicy static method) get_policy_state() (Agent method) get_pretty_print_str() (in module episimmer.utils) get_result() (TestResult method) get_results() (Machine method) get_score() (BanditAlgos method) get_scores() (ChunkAgentVulnerability method) get_stats() (VaccinationPolicy method) get_value() (BaseReadFile method) get_value_config() (ReadConfiguration method) (ReadVDConfiguration method)

H

handle_time_step_as_agent() (Simulate method)

handle_time_step_for_all_agents() (Simulate method) has_empty_results() (Machine method)

I

increment_current_time_step() (Time static method) init_scores() (AgentVD method) (BanditAlgos method) (EventVD method) (SimpleAgentVulnerability method) (SimpleEventVulnerability method) initialize_policy_dict() (Agent method) initialize_process_logs() (TestPolicy method) initialize_state() (Agent method) initialize_states() (BaseModel method) (ScheduledModel method) (StochasticModel method)

initialize_statistics_logs() (TestPolicy method) inject_vaccine() (VaccineType method) insert_state() (ScheduledModel method) insert_state_custom() (ScheduledModel method) is_agent_test_ready() (TestPolicy static method) is_empty() (Machine method) (TestTube method) is_full() (Machine method) is_in_machine() (TestTube method) is_running() (Machine method)

L

Location (class in episimmer.location) lockdown_agent() (AgentLockdownPolicy method)

lockdown_contacts() (TestingBasedLockdown method) lockdown_event() (EventLockdownPolicy method) lockdown_positive_agents() (TestingBasedLockdown method)

M

Machine (class in episimmer.policy) module episimmer.agent episimmer.location episimmer.simulate episimmer.utils.time episimmer.world

module_from_file() (in module episimmer.utils) multi_dose_vaccination() (VaccinationPolicy method)

N

new_time_step() (Agent method) (CTPolicy method) (Location method) (TestPolicy method) (VaccinationPolicy method)

new_world() (Time static method)

O

on_start_simulation() (Simulate method) on_start_time_step() (Simulate method) one_run() (AgentVD method) (BanditAlgos method) (ChunkAgentVulnerability method) (EarlyVulnerableAgent method) (EventVD method) (SimpleAgentVulnerability method) (SimpleEventVulnerability method) (SimpleVulnerableAgent method)

one_run_helper() (BanditAlgos method) one_world() (World method)

P

p_function() (StochasticModel method) p_infection() (ScheduledModel method) (StochasticModel method) p_standard() (StochasticModel method) parse_args() (in module episimmer.utils) plot_results() (in module episimmer.utils) Policy (class in episimmer.policy) populate_machine_results() (Machine method) populate_one_time_events() (ReadOneTimeEvents method) populate_results() (VaccinationPolicy method)

populate_results_in_machine() (TestPolicy method) populate_test_queue() (TestPolicy method) post_policy() (CTPolicy method) (Policy method) print_default_output() (AgentVD method) (BanditAlgos method) (EventVD method) process_dict() (in module episimmer.utils) process_dict_recursion() (in module episimmer.utils) protect() (Agent method)

R

random_testing() (TestPolicy method) random_vaccination() (VaccinationPolicy method) read_agents_file() (ReadAgents method) read_config_file() (ReadConfiguration method) read_events_file() (ReadEvents method) read_files_list() (ReadFilesList method) read_interactions_file() (ReadInteractions method) read_locations_file() (ReadLocations method) read_one_time_events_file() (ReadOneTimeEvents method) read_parameter_file() (ReadVDConfiguration method) read_prob_interactions_file() (ReadProbabilisticInteractions method) read_vd_config_file() (ReadVDConfiguration method) ReadAgents (class in episimmer.read_file) ReadConfiguration (class in episimmer.read_file) ReadEvents (class in episimmer.read_file) ReadFilesList (class in episimmer.read_file) ReadInteractions (class in episimmer.read_file) ReadLocations (class in episimmer.read_file) ReadOneTimeEvents (class in episimmer.read_file) ReadProbabilisticInteractions (class in episimmer.read_file) ReadVDConfiguration (class in episimmer.read_file) reduce_agent_schedule_time() (CTPolicy static method) reduce_agents_schedule_time() (CTPolicy static method) register_agent() (TestTube method) register_testtube() (Machine method) register_testtubes_to_machines() (TestPolicy method) release_results() (TestPolicy method) release_results_to_agents() (TestPolicy method) release_results_to_policy() (TestPolicy method)

remove_agents() (AgentVulnerability method) (BanditAlgos method) (ChunkAgentVulnerability method) (SimpleAgentVulnerability method) reset() (CTPolicy method) (Policy method) (StochasticModel method) (TestPolicy method) (Time static method) reset_machine() (Machine method) reset_start_infection() (EarlyVulnerableAgent method) reset_world() (ChunkAgentVulnerability method) restrict_agents() (VaccinationPolicy method) run_completed() (Machine method) run_detection() (AgentVD method) (BanditAlgos method) (ChunkAgentVulnerability method) (EarlyVulnerableAgent method) (EventVD method) (SimpleAgentVulnerability method) (SimpleEventVulnerability method) (SimpleVulnerableAgent method) run_output() (VD method) run_postprocess() (VD method) run_preprocess() (VD method) run_single_test() (Machine method) run_tests() (Machine method) (TestPolicy method) run_vul_detection() (VD method)

S

save_env_graph() (in module episimmer.utils) save_events() (CTPolicy method) save_interactions() (CTPolicy method) save_pickle() (in module episimmer.utils) save_results() (Machine method) save_stats() (in module episimmer.utils) save_to_text_file() (in module episimmer.utils) save_valid_interactions_events() (Simulate method) scheduled() (ScheduledModel method) ScheduledModel (class in episimmer.model) select_event() (SimpleEventVulnerability method) set_ax_params() (in module episimmer.utils) set_contacts_schedule_time() (CTPolicy static method) set_event_contribution_fn() (BaseModel method) set_event_receive_fn() (BaseModel method) set_external_prevalence_fn() (BaseModel method) set_in_machine() (TestTube method) set_next_state() (Agent method) set_protection() (VaccinationPolicy method)

set_register_agent_testtube_func() (TestPolicy method) set_register_agent_vaccine_func() (VaccinationPolicy method) set_result() (TestTube method) set_state_color() (BaseModel method) set_symptomatic_states() (BaseModel method) set_transition() (StochasticModel method) SimpleAgentVulnerability (class in episimmer.vulnerability_detection) SimpleEventVulnerability (class in episimmer.vulnerability_detection) SimpleVulnerableAgent (class in episimmer.vulnerability_detection) Simulate (class in episimmer.simulate) simulate_worlds() (World method) state_proportion_checker() (BaseModel method) states_checker() (BaseModel method) Stats (class in episimmer.utils) stats_dict (Stats attribute) StochasticModel (class in episimmer.model) store_animated_dynamic_graph() (in module episimmer.utils) store_animated_time_plot() (in module episimmer.utils) store_event_lists() (Simulate method) store_state() (Simulate method)

T

TestingBasedLockdown (class in episimmer.policy) TestPolicy (class in episimmer.policy)

TestResult (class in episimmer.policy) TestTube (class in episimmer.policy) Time (class in episimmer.utils.time)

U

update_agent_policy_history() (AgentPolicy method) update_agent_policy_state() (AgentPolicy method) update_agent_scores() (AgentVD method) (BanditAlgos method) (ChunkAgentVulnerability method) (EarlyVulnerableAgent method) (SimpleAgentVulnerability method) (SimpleVulnerableAgent method)

update_agent_start_infection() (EarlyVulnerableAgent method) update_contribute_infection() (Agent method) update_event_infection() (BaseModel method) update_event_scores() (EventVD method) (SimpleEventVulnerability method) update_process_logs() (TestPolicy method) update_receive_infection() (Agent method) update_state() (Agent method)

V

vaccinate() (VaccineType method) VaccinationPolicy (class in episimmer.policy) VaccineResult (class in episimmer.policy)

VaccineType (class in episimmer.policy) valid_interaction() (Simulate method) VD (class in episimmer.vulnerability_detection) VulnerableAgent (class in episimmer.vulnerability_detection)

W

World (class in episimmer.world)

write_stats() (in module episimmer.utils)

Z

zero_turnaround_time_func() (TestPolicy method)